Germán Rodríguez
Survival Analysis Princeton University

The U.S. 2013 Life Table

The file us2013s.dat has two columns representing age and the survival function by single years of age, for ages 0 to 110. The data come from the latest period life table for the U.S. I downloaded them from www.mortality.org, which seems more user-friendly than the National Center for Health Statistics, the original source.

Here's how to read and plot the survival function, and how to compute and plot the (log of the) hazard function.

. insheet using http://data.princeton.edu/pop509/us2013s.dat, delim(" ") case
(2 vars, 111 obs)

. gen H = -log(S)

. gen agem = age + 0.5

. gen h = H[_n+1] - H
(1 missing value generated)

. gen logh = log(h)       
(1 missing value generated)

. line S age, name(p1, replace) title(Survival)

. line logh agem, xtitle("age") name(p2, replace) title("Hazard (log)")

. graph combine p1 p2, xsize(8) ysize(4) title("U.S. 2013")

. graph export us2013.png, width(800) height(400) replace
(file us2013.png written in PNG format)

U.S. 2013

> us <- read.table("http://data.princeton.edu/pop509/us2013s.dat", header=TRUE)

> us <- mutate(us, 
+   H = -log(S), 
+   agem =age + 0.5, 
+   h = c(diff(H), NA), 
+   logh=log(h))

> g1 <- ggplot(us, aes(x=age, y=S)) + geom_line()

> g2 <- ggplot(slice(us,-n()), aes(x=agem, y=logh)) + geom_line() + xlab("age")

> g <- arrangeGrob(g1, g2, ncol=2)

> ggsave("us2013r.png", plot=g, width=10, height=5, dpi=72);

U.S. 2013 The Gompertz distribution provides a remarkably close fit to the hazard at adult ages, as one would expect from the linearity of the graph. Here's a visual check of the fit at ages above 30:

. line logh agem || lfit logh agem, title("Hazard and Gompertz Fit") legend(off)

. graph export us2013g.png, width(500) replace
(file us2013g.png written in PNG format)

U.S. Gompertz

> adults <- filter(us, age > 30, age < 110) 

> ggplot(adults, aes(x=agem, y=logh)) + geom_line() + stat_smooth(method="lm")

> ggsave("us2013gr.png", width=500/72, height=400/72, dpi=72)

U.S. Gompertz The U.S. survival function for 2002 is here, in a file that has age and S but no header. How much has the hazard function changed between 2002 and 2013?